T-quads are great carbs if rebuilt properly. They only have a bad rep because most people don’t understand how to build and tune the properly.
If you fallow the rebuild procedure in the F.S.M. to the “T” and make all of the linkage adjustments as described you will have a fantastic carb.
You should be able to drill and tap the holes pretty easily if you plan to run a choke. use the holes in the pull-off as a template. I've never had a choke on anything, winter driven or not. Note: on virtually every carburetor but a square-bore Holley, removing the choke horn and/or plate will cost you airflow. Leave it in place, just fix it open.
If the weight or ugly look means that much to you, you can pull off the EGR valve and make a plate to cover the openings. Use something at least 1/16" thick and a new gasket. The other option is to just leave the EGR valve in place, but disconnected. Cheap and easy, just like my ex-wife.
Use a piece of baling wire to see if it actually goes anywhere. If all it hits is the EGR, I wouldn't worry about it since you're blocking it. However, putting a plug in it might be a good idea if it's a place where fuel could collect and cause a potential disaster in the event of a backfire.
What year intake is this? I'll take a look at my '88 intake and see if it's got what you're discussing. Now, if I can just find it...
Some JB weld and you'll be PGF.